Preliminary Study of Phylogenetic Relationship of Rice Field Chironomidae (Diptera) Inferred From DNA Sequences of Mitochondrial Cytochrome Oxidase Subunit I
Problem statement: Chironomidae have been recorded in rice fields throughout the world including in many countries such as India, Australia and the USA. Although some studies provide the key to genera level and note the difficulty of identifying the larvae to species level. Chironomid researches have been hindered because of difficulties in specimen preparation, identification, morphology and literature. Systematics, phylogenetics and taxonomic studies of insects developed quickly with emergence of molecular techniques. These techniques provide an effective tool toward more accurate identification of ambiguous chironomid species. Approach: Samples of chironomids larvae were collected from rice plots at Bukit Merah Agricultural Experimental Station (BMAES), Penang, Malaysia. A 710 bp fragment of mitochondrial gene Cytochrome Oxidase subunit I (COI) was amplified and sequenced. Results: Five species of Chironomidae; three species of subfamily Chironominae, Chironomus kiiensis, Polypedilum trigonus, Tanytarsus formosanus, two species of subfamily Tanypodinae, Clinotanypus sp and Tanypus punctipennis were morphologically identified. The phylogenetic relationship among these species was been investigated. High sequence divergence was observed between two individuals of the presumed C. kiiensis and it is suggested that more than one species may be present. However the intraspecific sequence divergence was lower between the other species of Tanypodinae subfamily. Interestingly, Tanytarsus formosanus showed close phylogenetic relationship to Tanypodinae species and this presumably reflect co-evolutionary traits of different subfamilies. Conclusion: The sequence of the mtDNA cytochrome oxidase subunit I gene has proven useful to investigate the phylogenetic relationship among the ambiguous species of chironomids.
Copyright: © 2009 Salman A. Al-Shami, M.N. Siti Azizah, Che Salmah Md Rawi and Abu Hassan Ahmad. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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- DNA sequencing
- cytochrome oxidase subunit I